•  
  •  
 

Corresponding Author(s)

姚军(1973—),男,新疆医科大学教授,博士。E-mail:xydyaojun@163.com

Abstract

Foodborne diseases have become a prominent problem in the field of food safety. Rapid and accurate detection of food hazards is a key step in controlling foodborne diseases. As a novel biological recognition molecule, nucleic acid aptamers have become a research hotspot for constructing rapid and sensitive biosensors for the detection of food hazards. However, the affinity and selectivity of aptamers screened by Systematic Evolution of Ligands by Exponential Enrichment (SELEX) still need improvement to fully meet the requirements of analytical detection. This paper analyzes the intrinsic factors affecting aptamer performance, focuses on optimization strategies for nucleic acid aptamers, introduces their specific applications in the detection of food hazards, and discusses the future development trends of nucleic acid aptamers.

Publication Date

10-28-2025

First Page

209

Last Page

217

DOI

10.13652/j.spjx.1003.5788.2024.81133

References

[1] 孙静怡,边万超,刘婷.基于可变带宽的食源性疾病的制图方法构建:以副溶血性弧菌为例 [J].杭州师范大学学报 (自然科学版 ),2024,23(2):218-224.SUN J Y,BIAN W C,LIU T.Construction of mapping method for foodborne diseases based on variable bandwidth:a case study of Vibrio parahaemolyticus [J].Journal of Hangzhou Normal University (Natural Science Edition ),2024,23(2):218-224.
[2] TUERK C,GOLD L.Systematic evolution of ligands by exponential enrichment:RNA ligands to bacteriophage T 4 DNA polymerase [J].Science,1990,249(4 968):505-510.
[3] QIAN S W,CHANG D R,HE S S,et al.Aptamers from random sequence space:accomplishments,gaps and future considerations [J].Analytica Chimica Acta,2022,1 196(8):339511.
[4] WANG T,CHEN C Y,LARCHER L M,et al.Three decades of nucleic acid aptamer technologies:lessons learned,progress and opportunities on aptamer development [J].Biotechnology Advances,2019,37(1):28-50.
[5] 孙玉琼,袁宝银,邓美桃,等.核酸适配体序列优化策略的研究进展 [J].化学传感器,2018,38(2):12-22.SUN Y Q,YUAN B Y,DENG M T,et al.Recent development of the optimization strategies of aptamer sequences [J].Chemical Sensors,2018,38(2):12-22.
[6] 梁好,徐学明.食品危害物适配体截短优化及其应用研究进展[J].食品安全导刊,2021 (29):189-192.LIANG H,XU X M.Research progress on truncation optimization and application of aptamers for food hazards [J].China Food Safety Magazine,2021 (29):189-192.
[7] QI S,DUAN N,KHAN I M,et al.Strategies to manipulate the performance of aptamers in SELEX,post-SELEX and microenvironment [J].Biotechnology Advances,2022,55(2):107902.
[8] YU H,ZHU J X,SHEN G Q,et al.Improving aptamer performance:key factors and strategies [J].Microchimica Acta,2023,190(7):1-15.
[9] DUAN N,REN K X,LYU C,et al.Discovery and optimization of an aptamer and its sensing ability to amantadine based on SERS via binary metal nanoparticles [J].Journal of Agricultural and Food Chemistry,2022,70(46):14 805-14 815.
[10] 郭华麟.基于适配体探针的苹果汁中真菌毒素检测方法研究[D].无锡:江南大学,2022:16-17.GUO H L.Study on the detection method of mycotoxins in apple juice based on the aptamer probe [D].Wuxi:Jiangnan University,2022:16-17.
[11] YANG H,ZHU L J,WANG X X,et al.A label-free fluorescent magnetic dual-aptasensor based on aptamer allosteric regulation of β-lactoglobulin [J].Talanta,2024,271:125664.
[12] CHEN Y Q,WANG Z M,LIU S Y,et al.A highly sensitive and group-targeting aptasensor for total phthalate determination in the environment [J].Journal of Hazardous Materials,2021,412:125174.
[13] JIA M,SHA J Y,LI Z H,et al.High affinity truncated aptamers for ultra-sensitive colorimetric detection of bisphenol A with label-free aptasensor [J].Food Chemistry,2020,317:126459.
[14] 黄强,颜志超,刘建平,等.一种基于分子动力学模拟的核酸适配体优化设计方法:202110304532.4[P].2021 -07-16.HUANG Q,YAN Z C,LIU J P,et al.An optimization design method of nucleic acid aptamer based on molecular dynamics simulation:202110304532.4[P].2021 -07-16.
[15] LI R Y,ZHU Q Y,SUN X L,et al.Electrochemical biosensor based on the integration of maple leaf-like gold nanocrystal and truncated aptamer for detection of α-amanitin with high sensitivity,selectivity and rapidity [J].Food Chemistry,2024,453:139639.
[16] ZHANG W Q,SUN Z C,TIAN Y H,et al.Ratiometric fluorescent sensor based on a truncated specific aptamer by MGO-SELEX screening for streptomycin detection [J].Sensors and Actuators B-Chemical,2024,406:135427.
[17] YANG N R,DING N,QI S,et al.High-affinity truncated aptamers for detection of Cronobacter spp with magnetic separation-assisted DNAzyme-driven 3D DNA walker [J].Mikrochimica Acta,2024,191(3):130.
[18] CHEN K M,ZHOU J,SHAO Z T,et al.Aptamers as versatile molecular tools for antibody production monitoring and quality control [J].Journal of the American Chemical Society,2020,142(28):12 079-12 086.
[19] 韩静.基于卡那霉素适配体结合机理的检测应用研究 [D].无锡:江南大学,2023:30.HAN J.Study on binding mechanism and detection application of kanamycin aptamer [D].Wuxi:Jiangnan University,2023:30.
[20] GAO L,ZHANG Y,CHEN L,et al.Study of dual binding specificity of aptamer to ochratoxin A and norfloxacin and the development of fluorescent aptasensor in milk detection [J].Talanta,2024,273:125935.
[21] KIMOTO M,NAKAMURA M,HIRAO I.Post-ExSELEX stabilization of an unnatural-base DNA aptamer targeting VEGF 165 toward pharmaceutical applications [J].Nucleic Acids Research,2016,44(15):7 487-7 494.
[22] 杨妍.基于适配体分子操纵和亲和优化策略的生物传感检测技术研究 [D].北京:北京化工大学,2022:74-82.YANG Y.Aptamer-based molecular manipulation and affinity optimization strategy for biosensors development [D].Beijing:Beijing University of Chemical Technology,2022:74-82.
[23] SHA J Y,LIN H,ZHANG Z Y,et al.Preparation and validation of ultrasensitive aptamers by computer simulation and site-specific mutation [J].Food Analytical Methods,2023,16(1):215-224.
[24] ZHANG S C,QIN Y D,YUAN J,et al.Based on mutated aptamer-smartphone colorimetric detection of metronidazole in milk [J].Frontiers in Bioengineering and Biotechnology,2024,12:1444846.
[25] SIMONSSON T.G-quadruplex DNA structures-variations on a theme [J].Biological Chemistry,2001,382(4):621-628.
[26] NONAKA Y,SODE K,IKEBUKURO K.Screening and improvement of an anti-VEGF DNA aptamer [J].Molecules,2010,15(1):215-225.
[27] GAO S X,ZHENG X,WU J H.A graphene oxide-based aptasensor for ANGPTL 4 biomarker detection [J].Sensors and Actuators B-Chemical,2021,345:130389.
[28] 刘诺亚,高加乐,宋玉竹,等.腐霉利核酸适配体的筛选与鉴定[J].分析科学学报,2023,39(2):146-152.LIU N Y,GAO J L,SONG Y Z,et al.Screening and identification of procymidone nucleic acid aptamers [J].Journal of Analytical Science,2023,39(2):146-152.
[29] ZHENG X,HU B,GAO S X,et al.A saxitoxin-binding aptamer with higher affinity and inhibitory activity optimized by rational site-directed mutagenesis and truncation [J].Toxicon,2015,101:41-47.
[30] QIN Y D,QIN Y N,BUBIAJIAER H,et al.Engineering constructed of high selectivity dexamethasone aptamer based on truncation and mutation technology [J].Frontiers in Bioengineering and Biotechnology,2022,10:994711.
[31] KENT A D,SPIROPULOS N G,HEEMSTRA J M.General approach for engineering small-molecule- binding DNA split aptamers [J].Analytical Chemistry,2013,85(20):9 916-9 923.
[32] QIN Y Y,LIU S D,MENG S Y,et al.Split aptamer-based sandwich-type ratiometric biosensor for dual-modal photoelectrochemical and electrochemical detection of 17β-estradiol [J].Analytica Chimica Acta,2024,1 285:342030.
[33] STOJANOVIC M N,DE PRADA P,LANDRY D W.Fluorescent sensors based on aptamer self-assembly [J].Journal of the American Chemical Society,2000,122(46):11 547-11 548.
[34] CHEN X,CHEN K R,DU Z H,et al.Fusion of binary split allosteric aptasensor for the ultra-sensitive and super-rapid detection of malachite green [J].Journal of Hazardous Materials,2022,425(5):127976.
[35] DU Y M,ZHOU Y Y,WEN Y L,et al.Multiplexed aptasensing of food contaminants by using terminal deoxynucleotidyl transferase-produced primer-triggered rolling circle amplification:application to the colorimetric determination of enrofloxacin,lead (II),Escherichia coli O157:H7 and tropomyosin [J].Microchimica Acta,2019,186(12):840.
[36] SHANG Z X,MA P F,KHAN I M,et al.A DNA tweezers fluorescence aptasensor based on split aptamer-assisted magnetic nanoparticles for the detection of enrofloxacin in food [J].Food Control,2023,145(3):109437.
[37] WANG R Y,ZHANG Q S,ZHANG Y,et al.Unconventional split aptamers cleaved at functionally essential sites preserve biorecognition capability [J].Analytical Chemistry,2019,91(24):15 811-15 817.
[38] LUO Y,JIN Z Y,WANG J E,et al.The isolation of a DNA aptamer to develop a fluorescent aptasensor for the thiamethoxam pesticide [J].Analyst,2021,146(6):1 986-1 995.
[39] ZHANG Y,HU Y,DENG S,et al.Engineering multivalence aptamer probes for amplified and label-free detection of antibiotics in aquatic products [J].Journal of Agricultural and Food Chemistry,2020,68(8):2 554-2 561.
[40] 兰欣悦,刘宁宁,朱龙佼,等.四环素双价适配体非酶免标记传感器 [J].生物技术通报,2022,38(3):276-284.LAN X Y,LIU N N,ZHU L J,et al.Tetracycline bivalent aptamer non-enzyme label-free sensor [J].Biotechnology Bulletin,2022,38(3):276-284.
[41] ZHAO L H,QI X Y,YAN X C,et al.Engineering aptamer with enhanced affinity by triple helix-based terminal fixation[J].Journal of the American Chemical Society,2019,141(44):17 493-17 497.
[42] JI D Y,FENG H X,LIEW S W,et al.Modified nucleic acid aptamers:development,characterization,and biological applications [J].Trends in Biotechnology,2023,41(11):1 360-1 384.
[43] 罗明兰.靶向蛋白靶标的 2'-F及2'-OMe全修饰非天然核酸适配体的开发及表征 [D].广州:华南理工大学,2023:10.LUO M L.Development and characterization of 2'-F and 2'-OMe fully modified unnatural nucleic acid aptamers targeting protein targets [D].Guangzhou:South China University of Technology,2023:10.
[44] CHEN Z F,LUO H,GUBU A M,et al.Chemically modified aptamers for improving binding affinity to the target proteins via enhanced non-covalent bonding [J].Frontiers in Cell and Developmental Biology,2023,11:1091809.
[45] RANGEL A E,CHEN Z,AYELE T M,et al.In vitro selection of an XNA aptamer capable of small-molecule recognition [J].Nucleic Acids Research,2018,46(16):8 057-8 068.
[46] 韦庆益,林轩然,张佩瑶,等.基于金纳米粒子的荧光适配体传感器检测食品中的 17β-雌二醇 [J].食品科学,2023,44(14):368-376.WEI Q Y,LIN X R,ZHANG P Y,et al.Detection of 17β-estradiol in foods by a fluorescence aptasensor based on gold nanoparticles [J].Food Science,2023,44(14):368-376.
[47] HUI Y Y,YANG D,WEI L S,et al.Rapid and label-free electrochemical aptasensor based on a palladium nanoparticles/titanium carbide/polyethyleneimine functionalized nitrogen-doped carbon nanotubes composite for amplified detection of streptomycin [J].Food Chemistry,2024,432:137271.
[48] LI H L,DU C C,GUO T,et al.Ratiometric electrochemical aptasensor based on split aptamer and Au-rGO for detection of aflatoxin M 1[J].Journal of Dairy Science,2024,107(5):2 748-2 759.
[49] 王瑞安,杜再慧,康帅帅,等.基于杂交链式反应扩增检测奶粉中阪崎肠杆菌的适配体磁珠荧光传感器 [J].食品科学,2024,45(1):191-197.WANG R A,DU Z H,KANG S S,et al.Aptamer-functionalized magnetic bead-based fluorescence sensor for the detection of Cronobacter sakazakii in milk powder using hybridization chain reaction amplification [J].Food Science,2024,45(1):191-197.
[50] QI S,DONG X Z,HAMED E M,et al.Ratiometric fluorescence aptasensor of allergen protein based on multivalent aptamer-encoded DNA flowers as fluorescence resonance energy transfer platform [J].Analytical Chemistry,2024,96(18):6 947-6 957.
[51] CHEN C,ZHANG Y F,WANG X M,et al.A core-satellite self-assembled SERS aptasensor containing a ""biological-silent region"" Raman tag for the accurate and ultrasensitive detection of histamine [J].Food Science and Human Wellness,2024,13(2):1 029-1 039.
[52] SEN D,LAZENBY R A.Selective aptamer modification of Au surfaces in a microelectrode sensor array for simultaneous detection of multiple analytes [J].Analytical Chemistry,2023,95(17):6 828-6 835.
[53] GE G,WANG T L,LIU Z H,et al.A self-assembled DNA double-crossover-based fluorescent aptasensor for highly sensitivity and selectivity in the simultaneous detection of aflatoxin M1 and atlatoxin B1[J].Talanta,2023,265:124908.
[54] 祁兴普,董骐玮,朱麟菲,等.基于金纳米花的双信号适配体传感器检测红酒中真菌毒素 [J].食品科学,2024,45(2):308-314.QI X P,DONG Q W,ZHU L F,et al.A gold nanoflower-based dual-signal fluorescent aptasensor for detection of mycotoxins in red wine [J].Food Science,2024,45(2):308-314.
[55] WANG W J,ZHANG L,DONG W H,et al.A colorimetric aptasensor fabricated with group-specific split aptamers and complex nanozyme for enrofloxacin and ciprofloxacin determination [J].Journal of Hazardous Materials,2023,458(Suppl C ):131995.
[56] WANG J,ZHU L J,LI T S,et al.In silico simulation-guided engineering of multifunctional bivalent light up aptamer for sensitive and on-site detection of AFB1 using label-free ratiometric fluorescent aptasensor [J].Sensors and Actuators B-Chemical,2024,420:136425.

Share

COinS
 
 

To view the content in your browser, please download Adobe Reader or, alternately,
you may Download the file to your hard drive.

NOTE: The latest versions of Adobe Reader do not support viewing PDF files within Firefox on Mac OS and if you are using a modern (Intel) Mac, there is no official plugin for viewing PDF files within the browser window.